Protein Info for Atu2426 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (branched chain amino acid)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 139 to 180 (42 residues), see Phobius details amino acids 186 to 210 (25 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 244 to 260 (17 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 368 to 397 (30 residues), see Phobius details amino acids 417 to 435 (19 residues), see Phobius details PF11862: DUF3382" amino acids 19 to 118 (100 residues), 61.3 bits, see alignment E=9.2e-21 PF02653: BPD_transp_2" amino acids 137 to 432 (296 residues), 162.3 bits, see alignment E=1.3e-51

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu2426)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHV4 at UniProt or InterPro

Protein Sequence (465 amino acids)

>Atu2426 ABC transporter, membrane spanning protein (branched chain amino acid) (Agrobacterium fabrum C58)
MTNIASENAASSPSLMATAMKEGLIAGVISFGMFILYIGIITYQDINNQLIWGTRWGLLA
IFVAVAAVGRFLVVGFIKPSLDRRKLSKAKSGVLEISEEKGFFHKHFLKFALVLLLLYPV
IAVQLFGFQGSLKFVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYSYALL
SSQFGLSFWVLLPVAGILAGFWGVILGFPVLRLRGDYLAIVTLAFGEIIRLVLLNWTAVT
KGTFGISGIAKASVFGIWSFDVGAPNNFAKVFGLSMSSAYYKIFLFYVILLLCMLTAYVT
IKLRRMPIGRAWEALREDEIACRSLGIDTVITKLTAFATGAMFGGFAGSFFAARQGFVSP
ESFVFLESAVILAIVVLGGMGSLTGIAIAALVMVGGTELLREMEFLKHVFGPDFTPELYR
MLLFGLAMVIVMLFKPRGFVGSREPTAFLRERKAVSGSFTKEGHG