Protein Info for Atu2411 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein (urea/amide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 12 to 253 (242 residues), 385.1 bits, see alignment E=7.4e-120 PF00005: ABC_tran" amino acids 28 to 183 (156 residues), 109.7 bits, see alignment E=1.8e-35

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 100% identity to atu:Atu2411)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CX46 at UniProt or InterPro

Protein Sequence (253 amino acids)

>Atu2411 ABC transporter, nucleotide binding/ATPase protein (urea/amide) (Agrobacterium fabrum C58)
MNTVSENRTKSLLYLDGVSVSFDGFKALNSLSFVVEPGELRAIIGPNGAGKTTMMDIITG
KTRPDTGTVLFEDSIDLTKKDEADIAQLGIGRKFQKPTVFESHTVWDNLELALNRKRGVF
ATLFYRLTEEDKARIEEILATVRLGHRRGDLAANLSHGQKQWLEIGMLLAQEPKLLLVDE
PVAGMTDAETAETTVLLKEIAKTRSVVVVEHDMGFIRELGVKVTCLAEGSVLAEGSIDFV
SSDPKVIENYLGR