Protein Info for Atu2402 in Agrobacterium fabrum C58

Annotation: urease accessory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Swiss-Prot: 54% identical to UREY_RHIME: Urease operon 23 kDa accessory protein (R02471) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to atu:Atu2402)

Predicted SEED Role

"small molecule metabolism; central intermediary metabolism; nitrogen metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHW5 at UniProt or InterPro

Protein Sequence (209 amino acids)

>Atu2402 urease accessory protein (Agrobacterium fabrum C58)
MIVGNGELPPGVAGFIDLSDLVIRFNDCRSLGAGGRRTDVVAVCNTGRPGHEMTQGRDWR
ESDGVRQASALWSVRDPAKFSEMEPGIRARWPELTDFCVDYTAGFAAIAAETSKSHIVIP
RDVHERLDKALAAHAPAPYVCPSTGLVAIAHVLESVSGDGDEVAIAGFSHQGWSGHPFAA
EQQLVDTLSNEGRLARISPTSIFSASQGA