Protein Info for Atu2377 in Agrobacterium fabrum C58

Annotation: succinoglycan biosynthesis transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 425 to 450 (26 residues), see Phobius details PF02706: Wzz" amino acids 13 to 103 (91 residues), 40.9 bits, see alignment E=2e-14 PF13807: GNVR" amino acids 367 to 443 (77 residues), 32.6 bits, see alignment E=6.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2377)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CX75 at UniProt or InterPro

Protein Sequence (464 amino acids)

>Atu2377 succinoglycan biosynthesis transport protein (Agrobacterium fabrum C58)
MLPGLKYIDRIGVDDVLVWLRKGIVWIVLAIVLCVGGALTYASMTPPRYKAYTDIVVNPS
NLNVVNDGVFSPNQQRDTQILEVESKLRTITSRNVLARVVDELKLDQDPEFVSPPPLARL
KAMFSSKPDDGDNRVGALRSLGDRVTAERDPRSFVVTLSVWTNDAEKSVAVSKAIVKAFE
SELFQTNSDSSQRVVDDLKKRLEEMRENVTIAEKRVADFRRENGLQENNGQLVSNLASGE
LNAQVLATQQRLIQEESRLKQMEAAIAQNRTQSDAIFDSQTMNTIRAQYSTLQQQIGAMT
LTYGARHPRLATAGAERAMLERGMADEARRILQAAKINVAEARSSLDALRLKAVAERANV
FTDNDAQVRLRDLDRDARSAAAIYETYLTRSRQLAEQQSIDSTNVRVISQPVAPNSRSWP
PGKLTFLIAGGMGGLFLGLAIAVALGLWGYLRRDDHAEAAARYA