Protein Info for Atu2363 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 93 to 113 (21 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 10 to 120 (111 residues), 59.2 bits, see alignment E=2.3e-20 PF00528: BPD_transp_1" amino acids 35 to 224 (190 residues), 49.3 bits, see alignment E=2.5e-17

Best Hits

Swiss-Prot: 37% identical to NOCM_AGRFC: Nopaline transport system permease protein NocM (nocM) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 100% identity to atu:Atu2363)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHY1 at UniProt or InterPro

Protein Sequence (229 amino acids)

>Atu2363 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MDFSWVAKYWPLLLSGAWQTLALLVISVSIGFVLAIGLAFAQVSGGRVTKILARAYCTFF
RGTPLLIQLWLLYYGVGSFLPMIPGLRQSFMWPVLREGFFFAAVSFTLNYAAYEAEVLRG
ALLAVPKGELEAGRAFGMGRFTLIRRIWLPRAIRIALPTITGEVVMQLKATPLAFTVTVM
DLYAVAYKVRQDTLLVYEPLIVVTVFYLILTAIIARCFGLVERQVPVRR