Protein Info for Atu2346 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (sugar)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 245 to 263 (19 residues), see Phobius details amino acids 293 to 313 (21 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details amino acids 349 to 372 (24 residues), see Phobius details amino acids 376 to 393 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 54 to 205 (152 residues), 53.8 bits, see alignment E=8.4e-19 amino acids 188 to 388 (201 residues), 102.9 bits, see alignment E=8.7e-34

Best Hits

KEGG orthology group: K10547, putative multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu2346)

Predicted SEED Role

"Sugar ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CX98 at UniProt or InterPro

Protein Sequence (398 amino acids)

>Atu2346 ABC transporter, membrane spanning protein (sugar) (Agrobacterium fabrum C58)
MSSANTTNEESNVISVGSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQ
NSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGII
GAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQVISTGFLPDIGGI
EGLNTTSMILTVLITVALFYLAWRRRVVNVKHGIDVEPFGFFIVQNLLISGAILFLGYQL
STYRGLPNVLIVMLVLIALYSFVTRRTTIGRRVYAMGGNEKATKLSGINTERLSFLTFVN
MGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMG
VMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNKG