Protein Info for Atu2307 in Agrobacterium fabrum C58

Annotation: monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF00296: Bac_luciferase" amino acids 1 to 301 (301 residues), 169.1 bits, see alignment E=8e-54 TIGR03858: probable oxidoreductase, LLM family" amino acids 2 to 339 (338 residues), 525 bits, see alignment E=3.5e-162

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2307)

Predicted SEED Role

"putative oxidoreductase protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CI16 at UniProt or InterPro

Protein Sequence (353 amino acids)

>Atu2307 monooxygenase (Agrobacterium fabrum C58)
MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDYVVSSP
STVLAAAAVKTKNIRLTSAVSVLSSDDPVRVFQQFSTVDLLSNGRAEIMAGRGSFIESYP
LFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAINGRGVYPRPLQERLPVWIAVG
GTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGFIA
DTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKIIKA
HGVFKNDRFLLQMAIGLMPHDQIMRGIELYGTKVAPLVRKELTGSADPVKATA