Protein Info for Atu2305 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 217 to 241 (25 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 306 to 327 (22 residues), see Phobius details amino acids 339 to 362 (24 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 322 (301 residues), 61.4 bits, see alignment E=7.3e-21 PF06779: MFS_4" amino acids 23 to 387 (365 residues), 445.4 bits, see alignment E=2e-137

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2305)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CI18 at UniProt or InterPro

Protein Sequence (396 amino acids)

>Atu2305 MFS permease (Agrobacterium fabrum C58)
MSIDKPLSTRHLTALGFAGALMMASAMGFGRFSFTPILPGMMADVPLSAGDAGIVAAGNF
AGYLAGAILAASSWGSGRERLVALCGLFSTAALLLAMAAFNSVAAFTVIRFLAGVASAMT
MIFTSQIVIGHAAKAGRDSVQALHYGGVGAGIAISSLAVYLIGVVFDGGGSSWREEWIAG
AVFSFVAFLLVFRVLPAGPPRHASSAAEPPLAWTRPLFLTTLAYGLFGFGYVITATFIVA
IARMAAAGAFVEFLAWFITGCAAAASLFLWKPVLKSQRLKRAFVIVLAVEAVGVFASVML
PPVAGVLAGGLLLGLTFMVITAYGLQLGREFAGPSPRRAFALMTAAFGTGQIVGPLAAGW
IAEVTGSFTAPSILASAVLVVSILLMLPVLAAEGRR