Protein Info for Atu2265 in Agrobacterium fabrum C58

Annotation: benzoate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 85 to 110 (26 residues), see Phobius details amino acids 116 to 139 (24 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 250 to 280 (31 residues), see Phobius details amino acids 292 to 316 (25 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details PF03594: BenE" amino acids 4 to 384 (381 residues), 336 bits, see alignment E=1.4e-104 TIGR00843: benzoate transporter" amino acids 8 to 382 (375 residues), 259.5 bits, see alignment E=2.6e-81

Best Hits

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 100% identity to atu:Atu2265)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U552 at UniProt or InterPro

Protein Sequence (392 amino acids)

>Atu2265 benzoate transport protein (Agrobacterium fabrum C58)
MLKDFSVQSLFMGCLTAFVGFASSFAVILQGLKAVGATDFQAASGLMVLSVAMGLCAIIL
SVATRMPISMAWSTPGGALLATTGVIEGGFPAAVGGFVVCAILIIIAGLFRPLGRAVASI
PAPLANAMLSGVIIGLCYAPIKAIGFNPALGLPIILAWIVVGAFRRLFAVPAALAAFVLV
MIFGVDIPAGALDSVAQSLTPPMEWVTPTFSLHAVVSIALPLFIVTMASQNIPGIAVLKV
NHYDPQPGPLFAASGFFSLLSAPFGGHAVNLAAITAAMCAGEDAHPDPKRRYWAAIIAGV
GYIISGLLAGAVTAFVALAPPILIQAVAGLALVGAFSGSAVAAFKEPDTREAAAITFLIT
ASGLSFAGVSGAFWGLIGGGLMMALQRVVKRG