Protein Info for Atu2240 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 31 to 55 (25 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details PF03372: Exo_endo_phos" amino acids 98 to 299 (202 residues), 66.3 bits, see alignment E=1.7e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2240)

Predicted SEED Role

"FIG00363285: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CXJ5 at UniProt or InterPro

Protein Sequence (310 amino acids)

>Atu2240 hypothetical protein (Agrobacterium fabrum C58)
MTAKLSCMVSTAVAAVLFIASLRYVTDFWLLAFVTSFQLHIAIVCLLLSCLVFWLTRDVV
TAALLVWALALAIHAVAMLMEFSTAATAAPGARPFRLLSFNVLMDNAANADAIADKILEA
GADAVYLFEAAALQSVLPRLQQTYPHRLGCYEGTPGCDLVILSKRPLLEGRFHSLSDLRR
DRFAIAHVDLDGTELTLAAGHITKPYFDDYHRDELDEVSEILFRVTGPLILGGDFNSASI
APDMRAFLAANDLKKATFEPATWPTEAGRFGIAIDHIFAREPATLMKTTRLSDSLGSNHF
GLMADFMIGR