Protein Info for Atu2164 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 TIGR00149: secondary thiamine-phosphate synthase enzyme" amino acids 4 to 138 (135 residues), 135.9 bits, see alignment E=3.4e-44 PF01894: UPF0047" amino acids 18 to 138 (121 residues), 127.6 bits, see alignment E=1.4e-41

Best Hits

Swiss-Prot: 39% identical to Y1081_METJA: UPF0047 protein MJ1081 (MJ1081) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: None (inferred from 100% identity to atu:Atu2164)

Predicted SEED Role

"Uncharacterized protein sll1880 (YjbQ family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CI82 at UniProt or InterPro

Protein Sequence (140 amino acids)

>Atu2164 hypothetical protein (Agrobacterium fabrum C58)
MPQRTITIATRGQGLYEFTSEAEAMVRQAGLEEGLLTIFVRHTSCSLLIQENADPDVKHD
LLTFFSRLVPPSSDPSMRWIVHTLEGPDDMPAHIKSALTAVSIGVPIGEGRLVLGTWQGL
YLFEHRDQPHRREIVLHISP