Protein Info for Atu2134 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 227 to 247 (21 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 353 to 374 (22 residues), see Phobius details amino acids 380 to 397 (18 residues), see Phobius details PF07690: MFS_1" amino acids 35 to 336 (302 residues), 114.7 bits, see alignment E=4.7e-37 PF00083: Sugar_tr" amino acids 55 to 193 (139 residues), 35.4 bits, see alignment E=6.1e-13

Best Hits

Swiss-Prot: 58% identical to YDER_BACSU: Uncharacterized MFS-type transporter YdeR (ydeR) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to atu:Atu2134)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CXT3 at UniProt or InterPro

Protein Sequence (402 amino acids)

>Atu2134 MFS permease (Agrobacterium fabrum C58)
MMTTRVIDGDDVEATSISPALTFLLATACGLIAANLYYGQPLAGIIGTELGLSAGATGLI
VTLTQIGYGIGLLFVVPLGDLVENRKLVVSSVSMAVLSLVAAAFAPHAAPFLIAAFLVGV
SSVAVQVIVPYAAHMAPHAIRGRVVGNVMSGLMAGIMLARPVSSLLSEVVSWRGVFLTSA
AVMALLAVVLFRLLPVRMPEARLSYGALMASMGRLALHTPILRRRAIYHAFLFAAFSLFW
TTTPLYLSGPHFNLSQGEIALFALAGAAGTVAAPIAGRMADRGWTRVATLFALVSVALSF
AVTHLAPEGSHLALAILVVAAIVLDFGVTTNLVLGQRAIFTLGAEFRSRLNGIYMATFFM
GGAIGSAVGGWAYAVGEWPAASWIGFALPVAALLYFLTEKRA