Protein Info for Atu2122 in Agrobacterium fabrum C58

Annotation: lytic murein transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR02283: lytic murein transglycosylase" amino acids 45 to 337 (293 residues), 328 bits, see alignment E=2.6e-102 PF13406: SLT_2" amino acids 47 to 333 (287 residues), 283.2 bits, see alignment E=2.3e-88 PF01471: PG_binding_1" amino acids 355 to 408 (54 residues), 45.6 bits, see alignment 6.4e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2122)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIA0 at UniProt or InterPro

Protein Sequence (408 amino acids)

>Atu2122 lytic murein transglycosylase (Agrobacterium fabrum C58)
MPTFRSRSIVFAAALSLLSAGSALATPPVASPDDPKQVACGGDLGAFLEGVKAEAVAKGV
PAAAIEKALAGAQIDPKVLSRDRAQGVFRQTFLEFSQRTVSQARLDIGRKKLQELSSTFA
RAENEFGVPAGVIAAFWAMETDFGAVQGDFNTRNALVTLSHDCRRPELFRPQLLALIEMV
QHGDLDPATNTGAWAGEIGQVQMLPKDIIAFGVDGDGNGHINVKDSAPDAILTAAKFIQH
LGFKKGEPWMQEVSVPENLPWEKSGLGGSLTAGDWFALGVTPRDGNKNFASLPAALIMPQ
GRKGPTFITYPNFNIYLEWNQSFIYTTSAAYFANRLMGAPVYNKGNPDPGFDDATMKELQ
TKLEARGHDVGKVDGILGSGTRVAIQKEQQRLGMPADGWPTQALLQAL