Protein Info for Atu2091 in Agrobacterium fabrum C58

Annotation: GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 33 to 56 (24 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 106 to 258 (153 residues), 116 bits, see alignment E=7.3e-38 PF00990: GGDEF" amino acids 107 to 255 (149 residues), 104.9 bits, see alignment E=2e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2091)

Predicted SEED Role

"GGDEF domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CXW5 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Atu2091 GGDEF family protein (Agrobacterium fabrum C58)
MMLGLWKKPIEMMSFSVATQAGRRRLGPLEFSVRIACLVTLIVIVMCTGGLTLLAQFGLV
TDLFNGIMLSVTLGGAVAFTVTLLVCWLNAREVQILVQSHERFLHLSHTDALTGLSNRLG
LYAACAELGSDYCVAFLDIDHFKAVNDGYSHLVGDLVIASVARRIKEHFDPPAHVARLGG
EEFVVVQETSPLAFLQMCERVRAAIETTPVAYQDLRITVTISIGVAFRGDAEIFDKVMHN
ADLALYRAKGGGRNRVCMSGHVERRQAVA