Protein Info for Atu2083 in Agrobacterium fabrum C58

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 TIGR00634: DNA repair protein RecN" amino acids 1 to 554 (554 residues), 484.1 bits, see alignment E=3.8e-149 PF13476: AAA_23" amino acids 4 to 207 (204 residues), 40.9 bits, see alignment E=5.6e-14 PF02463: SMC_N" amino acids 14 to 502 (489 residues), 53.6 bits, see alignment E=3.2e-18

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 100% identity to atu:Atu2083)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIB2 at UniProt or InterPro

Protein Sequence (557 amino acids)

>Atu2083 DNA repair protein RecN (Agrobacterium fabrum C58)
MLVQLSIRDIVLIERLDLSFEAGLSVLTGETGAGKSILLDSLSLALGGRGDGGLVRHGED
KGQVTAAFEVPNDHPTRLLLRENGLDDDGDLIFRRVQSADGRTKAYVNDQAVSVQMMRQL
GQMLVEIHGQHDDRALVDTDAHRTLLDAFAGLSDEARSVQGLYRTWKDADRALKTHRAKV
EAAAREADYLRSSVEELETLSPRDGEEDELAERRAVMQKSERIAGDIAEASEFLNGNASP
VPVIASMMRRLERKSHEAPGLLEDTVQLLDAALDSLSNAQMEVEAALRRTEFDPRELERV
EERLFALRAAGRKYNVAVPDLPALAEKMVTDLADLDAGEEKLGKLEANLGIVKADFDRAA
RSLSEKRRNAAEALSGAVMAELPALKLERARFTVEVTSDPEQATADGIDTVEFHVQTNPG
TRPGPIMKVASGGELSRFLLALKVALADRGSAPTLVFDEIDTGVGGAVADAIGQRLRRLS
KTVQVLSVTHAPQVAARAATHLLISKGPSGDGSERIATRVATMEPNHRTEEIARMLAGAS
VTDEARAAAARLLAAKD