Protein Info for Atu2079 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 54 (22 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 180 to 201 (22 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details PF00892: EamA" amino acids 7 to 137 (131 residues), 73.5 bits, see alignment E=9.9e-25 amino acids 149 to 285 (137 residues), 65.8 bits, see alignment E=2.3e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2079)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CXX5 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Atu2079 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MDAREWAMLIALSLLWGGSFFFIGVAVKELPPVTIVTLRVSLAAVALLVVCRIMGLRLPR
EWAVWRAFFGMGLLNNIIPFCLIVWGQTQIASGLASILNATTPLFTVIVAHFLTADEKMT
GNKLAGVLIGFVGVATMIGPAAFGGSSGLWGQIAILGAAISYSFAGIFGRRFKAMGVPPL
MTATGQISSSTLMLIPAALLIDKPWTLAMPGLGTWGALIGIALLSTALAYLIFFRILASA
GATNLALVTFLIPVSAILLGSLILGEQLEIKHFAGMAMIAAGLAAIDGRLPVKLRSLLRN
APA