Protein Info for Atu2068 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 207 to 223 (17 residues), see Phobius details PF03591: AzlC" amino acids 15 to 155 (141 residues), 115.8 bits, see alignment E=1e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2068)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIC2 at UniProt or InterPro

Protein Sequence (240 amino acids)

>Atu2068 hypothetical protein (Agrobacterium fabrum C58)
MFNADFREGLKSGFPIALSAAPFGALFGAVAVDNGLSITEATIMSGTVYAGASQLVGIEL
FGQKVAPWLIVLSVFAVNFRHILYSAAIARMISNWSLLQKAAGFFVLVDPQFAESVRKYE
NTGTVGFSWYMGFATPVYVLWLAMTILGASLGNLVGDPKAIGLDVLLPIYFMGMVLSFRQ
RENFYPVMLASAAGATVAYHFVGSPWHVSLGAVAGIVVAVLYPPKQSAEAANPESKAETP