Protein Info for Atu2062 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 96 to 120 (25 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details PF04657: DMT_YdcZ" amino acids 6 to 143 (138 residues), 93.2 bits, see alignment E=8.9e-31

Best Hits

KEGG orthology group: K09936, hypothetical protein (inferred from 100% identity to atu:Atu2062)

Predicted SEED Role

"FIG073159: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIC4 at UniProt or InterPro

Protein Sequence (152 amino acids)

>Atu2062 hypothetical protein (Agrobacterium fabrum C58)
MNPLHLAAAFASGCLLTLMVHFNGQLAHYGNALFSSWTAHGTGTVAALIYLAIMRPKKDA
AAPAKPNAPLWAYCGGVVGAAIVILTSTAVNSPLALSGTIALGLGGQVIFSLLADLFGLF
GLPKRRPDVQDMVAVCLILCGSALIILVGRAA