Protein Info for Atu2026 in Agrobacterium fabrum C58

Annotation: exodeoxyribonuclease V

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF05970: PIF1" amino acids 4 to 130 (127 residues), 32.9 bits, see alignment E=1.3e-11 PF13604: AAA_30" amino acids 13 to 190 (178 residues), 86.5 bits, see alignment E=5.1e-28 PF13245: AAA_19" amino acids 23 to 151 (129 residues), 65.1 bits, see alignment E=1.8e-21 PF13538: UvrD_C_2" amino acids 327 to 374 (48 residues), 62.7 bits, see alignment 5.9e-21

Best Hits

KEGG orthology group: K01144, exodeoxyribonuclease V [EC: 3.1.11.5] (inferred from 100% identity to atu:Atu2026)

Predicted SEED Role

"RecD-like DNA helicase Atu2026"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CY17 at UniProt or InterPro

Protein Sequence (375 amino acids)

>Atu2026 exodeoxyribonuclease V (Agrobacterium fabrum C58)
MLFSPQQDEALKAVSRWLKEGRTPVFRLFGYAGTGKTTLAKHFAENVDGEVLFAAFTGKA
AQVLRSRGATNARTIHSLIYRPRGEETVEDEETGKTSVAPMFSINRQSPLAKAALIIIDE
CSMVDEQLGKDLMSFGTPILVLGDPGQLPPVSGGGFFTEQEPDFLLSEIHRQAKDNPIIH
LAMDVREGREIMRGDYGSAQVISKSEVTQSLVLEADQVLVGTNRTRRRYNQRLRELKGFS
ADYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSRETVKPGINLMIRPEDDDMDRGAAKIK
LLKAAFEDVETEIPWSTRKRYDEFDFGYALTVHKAQGSQWNNVVLFDESYAFRDSRERWL
YTAITRAAETLTIVR