Protein Info for Atu2013 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 transmembrane" amino acids 13 to 35 (23 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 301 to 325 (25 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details amino acids 387 to 415 (29 residues), see Phobius details amino acids 422 to 444 (23 residues), see Phobius details amino acids 476 to 496 (21 residues), see Phobius details amino acids 502 to 520 (19 residues), see Phobius details amino acids 529 to 552 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 91 to 263 (173 residues), 54.7 bits, see alignment E=5.4e-19 amino acids 374 to 559 (186 residues), 51.8 bits, see alignment E=4.4e-18

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to atu:Atu2013)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIE3 at UniProt or InterPro

Protein Sequence (564 amino acids)

>Atu2013 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MTRSKAYGSSQPRWLFPFVVSVVFALSALPLGRLAYTGIVSSLNGDIWRLLADPALWDAA
QNTLSTSFFGMLISLAIGGAFALSLTLCDIRGKSILSFLFMLPMMIPPQVTALSWIGMTG
PSSTLLKAIGLAPAMGSPQPLYSIAGIALLLGVQHAPLVYLSLRAGLLALPQDGIEAAKL
SGASPRRVLFDIILPLSTPGLIAGAAISFVSNVGNFGIPAILGIPGSIFTLPTLIYSRFA
SFGTSTFGDIAILSTMIAIISVAGLALQERAMKGRDYRIIGLSGKAATFGLGRWRVPAEL
ALWLVLLFMLVAPLTALVASSLAPAYGVPLSLKTATLHAYEELLYRQSVTRTAFRNSLFL
ATATSLCLLAVTVLTAYFLVRGKSRFMFLLSALVDIPYALPGVVISVSFVLLFAAPIPLL
GVTLYGTIWIILLAYFSSFFAVSLKPMVSAFLQFDPSLEEAARLSGAGFWRRLKDIILPL
VGPAAGASVILVFLIACNELTVSALLWSAGTQTLGVLIYNLDDSGSFDLASALSVLVVIM
VIILMLLLEILGRYLPKGVVPWRN