Protein Info for Atu1979 in Agrobacterium fabrum C58

Annotation: cyclopropane-fatty-acyl-phospholipid synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 PF02353: CMAS" amino acids 137 to 402 (266 residues), 273.7 bits, see alignment E=5.8e-85 PF13489: Methyltransf_23" amino acids 180 to 345 (166 residues), 59.1 bits, see alignment E=1.6e-19 PF05175: MTS" amino acids 188 to 293 (106 residues), 24 bits, see alignment E=9.6e-09 PF13847: Methyltransf_31" amino acids 193 to 300 (108 residues), 41.5 bits, see alignment E=4.2e-14 PF13649: Methyltransf_25" amino acids 198 to 292 (95 residues), 61.7 bits, see alignment E=3.1e-20 PF08241: Methyltransf_11" amino acids 199 to 295 (97 residues), 52.4 bits, see alignment E=2.4e-17 PF08242: Methyltransf_12" amino acids 199 to 293 (95 residues), 51.6 bits, see alignment E=4.5e-17

Best Hits

KEGG orthology group: K00574, cyclopropane-fatty-acyl-phospholipid synthase [EC: 2.1.1.79] (inferred from 100% identity to atu:Atu1979)

Predicted SEED Role

No annotation

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.79

Use Curated BLAST to search for 2.1.1.79

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIF4 at UniProt or InterPro

Protein Sequence (410 amino acids)

>Atu1979 cyclopropane-fatty-acyl-phospholipid synthase (Agrobacterium fabrum C58)
MTPFENLSELPAQNTRFNGRAGMGTWLVNRLLNNIERGRLRVTLPGGGTIEKSGHQEGSE
AILMLHNWRAIRRVLVNGDIGFAEGFIENDWSTPDLTALIRFAAQNQDAFARSTRGSLPM
RLINRMAHALNANTRRGSRRNIEAHYDLGNEFYRQWLDPSMLYSSAIFDDTTPTLEAAQR
KKLERIAEKLQLTGNNSVLEIGCGWGALAIHLATQQNADVTGITLSPSQLRWAENAAEKE
SKAGRIDLRLQDYRDVQGQFDNIVSVEMFEAVGESYWPSYFEMLKRCLKPGGRAVLQIIS
IDESRFDTYRRKADFIQKYVFPGGFLPSDSALEKSVGQAGLKLTETELFGQSYALTLAEW
RQRFHARWQTISLLGFDERFRRLWDYYLCYCEAGFAEGTINVGLYTIEHG