Protein Info for Atu1975 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 189 to 200 (12 residues), see Phobius details amino acids 204 to 227 (24 residues), see Phobius details PF06966: DUF1295" amino acids 19 to 248 (230 residues), 270.3 bits, see alignment E=1.4e-84 PF02544: Steroid_dh" amino acids 130 to 204 (75 residues), 30.8 bits, see alignment E=2.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1975)

Predicted SEED Role

"FIG005069: Hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CY59 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Atu1975 hypothetical protein (Agrobacterium fabrum C58)
MLSVILTLAILISLLMAGAWALQRATGSSGWIDTVWSASVGLGGVLAVLFAEGDGWRRAV
VFFLVVVWSLRLAGHIGMRTRGGGEDPRYAKLIEEWGSAASLRLFIFLQIQAIAAFILVL
AVYLATGNGQVFPRVIDVFATVVALTALAGEALSDAQLSKFRRTPEAKTGVCETGLWRYS
RHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHVSGIPPLEEHMLKSRGEK
FRALQRRVNAFFPGPRKNEETP