Protein Info for Atu1929 in Agrobacterium fabrum C58

Annotation: 30s ribosomal protein S5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 TIGR01021: ribosomal protein uS5" amino acids 20 to 172 (153 residues), 220.3 bits, see alignment E=5.3e-70 PF00333: Ribosomal_S5" amino acids 23 to 86 (64 residues), 98.2 bits, see alignment E=2.3e-32 PF03719: Ribosomal_S5_C" amino acids 99 to 169 (71 residues), 102.9 bits, see alignment E=5.2e-34

Best Hits

Swiss-Prot: 100% identical to RS5_AGRFC: 30S ribosomal protein S5 (rpsE) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02988, small subunit ribosomal protein S5 (inferred from 98% identity to avi:Avi_1859)

MetaCyc: 57% identical to 30S ribosomal subunit protein S5 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S5p (S2e)" in subsystem Ribosomal protein S5p acylation or Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UE35 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Atu1929 30s ribosomal protein S5 (Agrobacterium fabrum C58)
MAQEKRGSRDDRQNREERDSEFVDKLVAINRVAKVVKGGRRFGFAALVVVGDQKGRVGFG
HGKAREVPEAIRKATESAKRDLIFVPLRDGRTLHHDVNGRHGAGKVLLRSAKAGTGIIAG
GPMRAVFETLGVHDVVAKSTGSSNPYNMVRATFDALKHQVHPKDIAAQRGLKYATLQARR
AASGNASEE