Protein Info for Atu1920 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 122 to 138 (17 residues), see Phobius details amino acids 158 to 175 (18 residues), see Phobius details amino acids 182 to 198 (17 residues), see Phobius details PF01794: Ferric_reduct" amino acids 54 to 167 (114 residues), 59 bits, see alignment E=2.5e-20

Best Hits

Swiss-Prot: 100% identical to MSRQ_AGRFC: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: None (inferred from 100% identity to atu:Atu1920)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P58769 at UniProt or InterPro

Protein Sequence (215 amino acids)

>Atu1920 hypothetical protein (Agrobacterium fabrum C58)
MAFALSLPSLPKRYQPAAIWSLYVIGLCPGLWYFYLAATGGLGFNPVKDFEHLLGIWALR
FLCLGLLVTPLRDLFNVNLIAYRRALGLIAFYYVLAHFTVYLVLDRGLILGSIAGDILKR
PYIMLGMAGLIILIPLALTSNRWSIRRLGSRWNTLHKLVYLVLIVGVLHFVLARKSITLE
PVFYISTMVVLLGYRLVRPSIMTMKRNKRARPVRT