Protein Info for Atu1914 in Agrobacterium fabrum C58

Annotation: ATPase, AAA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 PF05496: RuvB_N" amino acids 24 to 151 (128 residues), 49 bits, see alignment E=2e-16 PF00004: AAA" amino acids 57 to 162 (106 residues), 60 bits, see alignment E=1.2e-19 PF16193: AAA_assoc_2" amino acids 187 to 262 (76 residues), 74.4 bits, see alignment E=2.5e-24 PF12002: MgsA_C" amino acids 263 to 428 (166 residues), 223.3 bits, see alignment E=6.1e-70

Best Hits

Swiss-Prot: 50% identical to RARA_ECOLI: Replication-associated recombination protein A (rarA) from Escherichia coli (strain K12)

KEGG orthology group: K07478, putative ATPase (inferred from 100% identity to atu:Atu1914)

Predicted SEED Role

"ATPase, AAA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIG3 at UniProt or InterPro

Protein Sequence (438 amino acids)

>Atu1914 ATPase, AAA family protein (Agrobacterium fabrum C58)
MSDDLFAPQVPVEVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFW
GPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIH
RFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSRARVLTFGSHDEDSLSELLKR
AEEAEGKPLPLTEEARASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRA
PVYDKSQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
ADPQALAVCNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGS
LVPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRTTFYDPPDRGFERE
IRKRLDWWAKLRRERGSR