Protein Info for Atu1823 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 TIGR01978: FeS assembly ATPase SufC" amino acids 2 to 245 (244 residues), 339.7 bits, see alignment E=4.5e-106 PF00005: ABC_tran" amino acids 20 to 174 (155 residues), 77.6 bits, see alignment E=7.5e-26

Best Hits

Swiss-Prot: 61% identical to Y075_SYNY3: Probable ATP-dependent transporter slr0075 (slr0075) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: K09013, Fe-S cluster assembly ATP-binding protein (inferred from 99% identity to agr:AGROH133_06911)

Predicted SEED Role

"Iron-sulfur cluster assembly ATPase protein SufC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIK9 at UniProt or InterPro

Protein Sequence (251 amino acids)

>Atu1823 ABC transporter, nucleotide binding/ATPase protein (Agrobacterium fabrum C58)
MLEIIDLHAKIADTETEIIKGLNLKVAAGEVAAIMGPNGSGKSTLSYILSGREDYEVTSG
DILYNGESILELDAAERAAKGIFLAFQYPVEIPGVATMQFLKVAMNEQRKARGESELTTP
DFIRRVKEAAGDLKIDMEMLKRPLNVGFSGGEKKRAEILQMALLEPKLCVLDETDSGLDI
DALKIVADGVNALKSPDRATVVITHYQRLLDYIVPDSVHVLYKGKIIRSGDKALALELEN
NGYADIIGEAA