Protein Info for Atu1768 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details TIGR00197: YjeF family N-terminal domain" amino acids 12 to 208 (197 residues), 138.5 bits, see alignment E=2.4e-44 PF03853: YjeF_N" amino acids 31 to 187 (157 residues), 124.2 bits, see alignment E=5.5e-40 TIGR00196: YjeF family C-terminal domain" amino acids 230 to 486 (257 residues), 166.7 bits, see alignment E=7.2e-53 PF01256: Carb_kinase" amino acids 248 to 480 (233 residues), 153.6 bits, see alignment E=6.4e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1768)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CYK7 at UniProt or InterPro

Protein Sequence (491 amino acids)

>Atu1768 hypothetical protein (Agrobacterium fabrum C58)
MIFLSQLSLFDPAAMARIDAAAGQSGISLYDLMERAGHAVAASGLRHYPQALRFVVLCGG
GNNGGDGYVAARALVQSGATVTVHHLGDAGTLRGDARVAFERSGLVPLPLGDYTPLAGDV
VIDAVFGAGLSRDVPQELARIIEAVTSARVPVLAVDLPSGLCGRRGVPLGASFRAERTVT
FMARKPGHLLMPGRELCGALEVFDIGIPLRILADHAGSVAENHPLVWRDALPASDLETHK
FRRGHLTVFSGPAHATGASRMTALAALKAGAGIVTIAAPKEALDLLSVTLTAVMNAPMDN
ADDLRLWLDDQRHGTFVLGPGFGDLKKARQFVSLLGDKAAVLDADAITAFKDHAAALFER
ITSGAGKFVLTPHEGEFARLFPDLAADRTLSKIEKAQVASARSGAALVYKGADTVIAAPD
GRALVSTNAPASLATAGSGDVLAGIIGALLAQGTPAFEAAAAGVWLHGEAGHRAGDGMTA
EDLAHAVRPFG