Protein Info for Atu1710 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1008 transmembrane" amino acids 650 to 671 (22 residues), see Phobius details PF05036: SPOR" amino acids 928 to 1006 (79 residues), 47.1 bits, see alignment 1.2e-16

Best Hits

KEGG orthology group: None (inferred from 98% identity to atu:Atu1710)

Predicted SEED Role

"Soluble lytic murein transglycosylase (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CYP7 at UniProt or InterPro

Protein Sequence (1008 amino acids)

>Atu1710 hypothetical protein (Agrobacterium fabrum C58)
MVEKNVAYNRDARSEGFADNDPLAELARIVGFDDRPSHAGSEVQPRAASPVVRREPEFNL
EDELLREFEVYDAPHADPVVLDPANDVRAGIHPTDFMQRVEEVFARREPELAPMAEPAPQ
PQVRQEPLPEVDQAYIHNYVETSGQQDIRADFRDDAGAVAEVFDVHSRQPRAAEPVVYQQ
AAPQVAPQLAWEEPQAIEPSQPEWHAMPELPADVSSNISSDAHAYAPEPQAFDLADEVEI
AVAEAAPAPVSVRPPAHGGRSSLEFSSLRLPLANFGARRDVSAVDPRRVEPRSELYPAAS
RIEPQVEPAPAVVQAEETAPSFAQPVAEVFTPAAEPLAPAIAERPAAKNLSPMDELIYGV
AQYSIPERGEAQPVKTEPVAQAAKVEPPAVAAAPAKAAPVAAAVPASPIEEPDFTDFTGF
NDDDFELALDDLDLDLDLSEIAEAEVAPAPQPVRPQPATPIAAVAPQPVRHEPAPQPRPA
PVVAAAPIAAAPVVAAPVQPRPVAAQPAVPQTLESLPFDPSQIGETEEHPETIIEMDVPE
LPVGVFEPKPAARRHEEDLDIDTELATLFAPAVAGGLDRHKHAENRGAAQARPAPAPEEA
DEFERALEEDFRRSMQEAAASRGNAPRDAETYVDHQAAYRDEDERGGRRWIMPVAAAIGL
VLIGGGVYALISGGSSGTGSNGAPVIISADNDPMKVVPENPGGRVVPNQDKAVYDRVAGG
AAADPKQPALISSNEKPVDVVQRTLIPEQLPLEGENDADMEAAGTPVGETEDPRLLSPEE
KAAHNEGAGATGVSPRKVRTMIVKPDGTLVAQEVDAPAAQPPKADKVAELAAPQTAKPGE
GAPAVIAASRVPVAPEQAQPQASTPAAAKPSTQSAAPLPAARPSSQPANVVATVTNQGNV
RPATTAPAQAAQQQTAAATPAATSTPSAGGYYIQIASLPSQAEAQKSYQNMSAKFGSVIG
GRGVDIKAAEIAGKGTFYRVRIPAGDKNEAVALCEKFRSAGGSCLVAR