Protein Info for Atu1697 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 242 to 267 (26 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details amino acids 306 to 326 (21 residues), see Phobius details amino acids 342 to 365 (24 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details TIGR00710: drug resistance transporter, Bcr/CflA subfamily" amino acids 15 to 392 (378 residues), 210.1 bits, see alignment E=3.7e-66 PF07690: MFS_1" amino acids 19 to 357 (339 residues), 155.5 bits, see alignment E=9.3e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1697)

Predicted SEED Role

"Bicyclomycin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIR5 at UniProt or InterPro

Protein Sequence (399 amino acids)

>Atu1697 MFS permease (Agrobacterium fabrum C58)
MKSSRFLDRTTPPHIITLVVIAGVAALCMNLFLPSLSAMALYFEIDYAVMQFAVSGYLAA
TALLQLVIGPLSDLFGRRPVMLASITIMIAATLVCMLASDITVFMIGRVAQAAVVSGFVL
ARAIVRDMVPMEQAASMIGYVTMGMSVVPMVGPTVGGLLNDFSGWQSSFALLALLGAGIL
VLAWFDLGETNQSKSASFSQQFHAWPELLRSPLFWGYALTSTFSSGMFFSFLGGAPFVGS
VLYGLTPAMLGLQFFFMASGYMLGNFVSGRYASQIGISRMMLSGNVIAIAGIVTAIALIT
GGAESAYAFFVPLALIGVGNGVTLPSANAGMVSVQPHLAGSASGLGGAMTIGGGAALSVL
ASSVLSKEDGTWPLLLVILATGLVALLTTYVVRLQEQRQ