Protein Info for Atu1653 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF11064: DUF2865" amino acids 176 to 275 (100 residues), 99.1 bits, see alignment E=1.2e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1653)

Predicted SEED Role

"FIG00985326: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIT2 at UniProt or InterPro

Protein Sequence (361 amino acids)

>Atu1653 hypothetical protein (Agrobacterium fabrum C58)
MLPLVFTAPAAAFAEQVCDTLYQQLREPPRVIGNTAEVRRYANALARQNIVIRKIRNDMR
SYGCSSGSVIVYGNPNASVCAEIGDALVDAEAERDAIIRDRDDAMAAARNDDGDVRRQRI
LAALDANGCSTMPETDTRLPQAPDVTRYPDAFRQQENEPGQAGLSPYPNAAAEGGLRTLC
VRTCDGSFFPIASNASPLDFRAQAEQCQKMCPGTETELYFHSMTDQETADMVSAQTGKPY
KDLPTAFAYRNSSPKAPGCACNMAAYHQDMQKQEEAARPQAERPYSSISTIPSPQGDKSG
DKPQKSAEQQQAAKPPEQPVPERDYDPNDTRVRVIGPKFLPDQTGRIDLKNPALKGIQPQ
Q