Protein Info for Atu1643 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details PF05232: BTP" amino acids 2 to 65 (64 residues), 83.8 bits, see alignment E=3.5e-28 amino acids 72 to 134 (63 residues), 86.8 bits, see alignment E=3.9e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1643)

Predicted SEED Role

"FIG00363045: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIT9 at UniProt or InterPro

Protein Sequence (145 amino acids)

>Atu1643 hypothetical protein (Agrobacterium fabrum C58)
MRSLQDRIRHALSFEIIGLMLVIPLGALLFGMPMEDIGIVGLVSATLATVWNYVYNLGFD
HAMQRLKGTTLKTPAIRVAHAVLFELGLLIVLMPFIAWYLNISLVHALVMDISFALFYVV
YAFVFNWSYDRIFPLPEWKSQQDAA