Protein Info for Atu1558 in Agrobacterium fabrum C58

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 34 to 57 (24 residues), see Phobius details amino acids 69 to 86 (18 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 118 to 133 (16 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 265 to 283 (19 residues), see Phobius details PF00892: EamA" amino acids 19 to 133 (115 residues), 43.4 bits, see alignment E=2.1e-15 amino acids 145 to 282 (138 residues), 30.5 bits, see alignment E=2.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1558)

Predicted SEED Role

"putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CYZ7 at UniProt or InterPro

Protein Sequence (298 amino acids)

>Atu1558 permease (Agrobacterium fabrum C58)
MTIMAGCMLVLPVMDAIAKYMAVSVGMSPAQVTFYRFFFQVLCTLPLLLVVSPGALFSAK
RPWMNCLRGVLHASASLMFFAAVKYMPLADVFAIYFVEPFMLTMMSALFLGDRVGWKRWT
AIVVGFGGALIVIQPSFEIFGWTSLLPVACAFFYTLYLFLNRAIGDADSPLVMQTMSGIA
GTLFMAAALFAGDALGDKDFAVSLPQSAFALVLLVLLGSLSGYMHLLIVRAFRLAPLSLL
APFQYFEIISATILGYALFSDFPTPSKWLGILIIVASGLFIIWRERQQPASTPPLEGQ