Protein Info for Atu1541 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 691 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 129 to 150 (22 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 242 to 264 (23 residues), see Phobius details amino acids 270 to 288 (19 residues), see Phobius details amino acids 302 to 320 (19 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 369 to 387 (19 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details amino acids 456 to 475 (20 residues), see Phobius details amino acids 481 to 503 (23 residues), see Phobius details PF21088: MS_channel_1st" amino acids 463 to 500 (38 residues), 36.1 bits, see alignment 7.7e-13 PF00924: MS_channel_2nd" amino acids 501 to 566 (66 residues), 54 bits, see alignment E=2.3e-18 PF21082: MS_channel_3rd" amino acids 573 to 660 (88 residues), 24 bits, see alignment E=6.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1541)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIY4 at UniProt or InterPro

Protein Sequence (691 amino acids)

>Atu1541 hypothetical protein (Agrobacterium fabrum C58)
MNVLSRLLRFCARLPALWLALCLFSSSTVFAQTPTPANPANQTTEQKVDQLLNLMGQDDV
RSLLAQRLSDTSDVAAPDDGNMSVLDQWASKRREHLARLAGDAPAIPGELSKAVTTLVNE
IEAYGLLRFLAHVALLFGVGITAGIATYWITAARTASALPGNVAEFALATASRRLLPVVG
YGLSATIMFFTIPLPPLLSAVLLPWLAVSVGLPLVKAVVDLLKRVINDGLNSRRQFWLTR
SLDLLAVAMVCWAALRMLVSLGVTAAAVKLISYAMIAALFALGIYFIWRQPQADANTERR
RSLDVAFTFYLFILFAVWIAGAGVFFWLGFFALVLPGAVGTLGIAARKTATAMGGYSETD
FRPVLAQRSVRLLVLGAAVIWLLFLIRNHPGALPGGSTVSAMFTGLLHGILVLLFADLFW
VAIKTVISRRLEMNAPAASEHGVPASDDRLQTILPILRNMLGILISAVSVMTVLSELGVD
IGPLLASAGIFGIAIGFGSQTLVKDIISGVFYMIDDAFRVGEYIQSGSYKGTVESFSIRS
VKLRHHRGPIYTVPFGSLGAVENMSRDWSIDKFLVTVAFDTDLTKVKSITREIGKALKDD
PEFGPMLIETVKLKGVEQFGDYGMTLGFGMMVKPNGQQSIIRRKAYSMLKDAFEQNGIEF
ATMSGTSPGKTKSGPQPPEEPPSEMTDNFRP