Protein Info for Atu1513 in Agrobacterium fabrum C58

Annotation: ABC excinuclease subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 973 TIGR00630: excinuclease ABC subunit A" amino acids 7 to 945 (939 residues), 1441.5 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 133 to 240 (108 residues), 133.4 bits, see alignment E=6e-43 PF17755: UvrA_DNA-bind" amino acids 311 to 419 (109 residues), 125.5 bits, see alignment E=2.4e-40

Best Hits

Swiss-Prot: 100% identical to UVRA_AGRFC: UvrABC system protein A (uvrA) from Agrobacterium fabrum (strain C58 / ATCC 33970)

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UF86 at UniProt or InterPro

Protein Sequence (973 amino acids)

>Atu1513 ABC excinuclease subunit A (Agrobacterium fabrum C58)
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGV
PYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRV
KVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPS
CDGLGSQQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTD
LSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPNLERRWKETDSAWAREEIERY
MSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIG
LHQRDNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQ
DVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTAV
TGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDV
YVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLG
YIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHALV
EQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LDRRPAGKREAAE