Protein Info for Atu1488 in Agrobacterium fabrum C58

Annotation: IS30 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 PF13936: HTH_38" amino acids 5 to 47 (43 residues), 48.6 bits, see alignment 2.8e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1488)

Predicted SEED Role

"IS30 family transposase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZ52 at UniProt or InterPro

Protein Sequence (333 amino acids)

>Atu1488 IS30 family transposase (Agrobacterium fabrum C58)
MSRCYTQITLADRRRLHHLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYDGY
YSTVAHDISRDRRRRLIKLRRHPALRAEIINQLEARWSPEQIAGRLQSDGFGRIRVCKET
IYRFIYSKEDYALGLYQYLPEARRKRRPMRSRKPRDGAFPSTHRISERPDFIGNRSKFGH
WEGDLLIFERPLGHANVTTLVERKSRYTVLIKNPSRHSGPIMDKIVRAFSLLPAFARQSF
TFDRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGSTDLAVVSQRD
LLRLTRHINDQPRKCLGYRTPAEVFIAHLQEGG