Protein Info for Atu1428 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 105 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details PF04977: DivIC" amino acids 23 to 101 (79 residues), 55.6 bits, see alignment E=1.9e-19

Best Hits

Swiss-Prot: 32% identical to Y423_RICPR: Uncharacterized protein RP423 (RP423) from Rickettsia prowazekii (strain Madrid E)

KEGG orthology group: None (inferred from 98% identity to agr:AGROH133_05918)

Predicted SEED Role

"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZA0 at UniProt or InterPro

Protein Sequence (105 amino acids)

>Atu1428 hypothetical protein (Agrobacterium fabrum C58)
MWTRHHKKRRFGRLIVPAITIAFLSYFGYHSIHGDFGLQATERLERQRLTRTAELAKLTQ
ARVALERQVELLSDGSLERDMIDEISRYQLNMSRTDEIVIMNTYF