Protein Info for Atu1375 in Agrobacterium fabrum C58

Annotation: translation elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 TIGR00116: translation elongation factor Ts" amino acids 1 to 307 (307 residues), 306.2 bits, see alignment E=1.1e-95 PF00889: EF_TS" amino acids 79 to 289 (211 residues), 215.4 bits, see alignment E=3.1e-68

Best Hits

Swiss-Prot: 100% identical to EFTS_AGRFC: Elongation factor Ts (tsf) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02357, elongation factor Ts (inferred from 100% identity to atu:Atu1375)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UFM2 at UniProt or InterPro

Protein Sequence (308 amino acids)

>Atu1375 translation elongation factor Ts (Agrobacterium fabrum C58)
MTEITAAMVKELREKSGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEG
LIGVATMGHKAVVVELNSETDFVARNDAFQDLIRGIAQVALTTDGTVDAVSAATYPATGK
SVADSIKDAIATIGENMTLRRSAALEVPHGVVATYVHNAAGDGIGKLGVLVALKSEGDKA
VLNSIGRQVAMHIAATNPLAIRAEEVDAAVAERERNVFIEQARESGKPEAIIEKMVDGRM
RKFFEEVALLSQAFVINPDITVGAAIKEVEKEAGASIEVTGMVRLLLGEGVEKEESDFAA
EVAAVAKG