Protein Info for Atu1374 in Agrobacterium fabrum C58

Annotation: 30S ribosomal protein S2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 TIGR01011: ribosomal protein uS2" amino acids 7 to 225 (219 residues), 334 bits, see alignment E=1.7e-104 PF00318: Ribosomal_S2" amino acids 11 to 225 (215 residues), 331.8 bits, see alignment E=7.1e-104

Best Hits

Swiss-Prot: 100% identical to RS2_AGRFC: 30S ribosomal protein S2 (rpsB) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02967, small subunit ribosomal protein S2 (inferred from 100% identity to atu:Atu1374)

Predicted SEED Role

"SSU ribosomal protein S2p (SAe)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UFM3 at UniProt or InterPro

Protein Sequence (255 amino acids)

>Atu1374 30S ribosomal protein S2 (Agrobacterium fabrum C58)
MALPDFSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVS
DTVARGGRVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGMMTNWKTISNSIQRLRKVD
EILNSEGSGYSKKERLTLEREREKLEKALGGIRDMGGVPDLMFIIDTNKEKIAIEEAKRL
GIPVVAIIDSNCDPDHIDYPIPGNDDASRAISLYCDLIARAAIDGIARQQGASGRDIGAS
EEAPIEPALEDEAGA