Protein Info for Atu1363 in Agrobacterium fabrum C58

Annotation: ATP-dependent Clp protease adaptor protein ClpS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 PF02617: ClpS" amino acids 34 to 112 (79 residues), 120.3 bits, see alignment E=1.2e-39

Best Hits

Swiss-Prot: 100% identical to CLPS1_AGRFC: ATP-dependent Clp protease adapter protein ClpS 1 (clpS1) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K06891, ATP-dependent Clp protease adaptor protein ClpS (inferred from 100% identity to atu:Atu1363)

Predicted SEED Role

"ATP-dependent Clp protease adaptor protein ClpS" in subsystem Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UFN4 at UniProt or InterPro

Protein Sequence (117 amino acids)

>Atu1363 ATP-dependent Clp protease adaptor protein ClpS (Agrobacterium fabrum C58)
MIAKPIYMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILER
FFQKDREAATRIMLHVHQHGVGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK