Protein Info for Atu1356 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 78 to 96 (19 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 64 to 351 (288 residues), 453.1 bits, see alignment E=2e-140 PF05128: DUF697" amino acids 194 to 348 (155 residues), 168.9 bits, see alignment E=3.9e-54

Best Hits

Swiss-Prot: 100% identical to Y1356_AGRFC: UPF0283 membrane protein Atu1356 (Atu1356) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K08990, putative membrane protein (inferred from 100% identity to atu:Atu1356)

Predicted SEED Role

"GTP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UFP1 at UniProt or InterPro

Protein Sequence (359 amino acids)

>Atu1356 hypothetical protein (Agrobacterium fabrum C58)
MKAPTQNDPQTRRPAAFTLETEEAARPSATQKRAPRSFDAEISLTPDEDDPFLAPADIDA
AALPVATPKKSRFSFGKLGLGALGVLFSLAFGLWADQLIRNLFSRSDWLGYTATIALIVA
LFAVLALVGREVFGIMRLNAVQSLKADAETASLDKSPKPARAIVTRLNAVLSHRAETAKG
RAALKETENDVIDGPHLIELAERELLVPLDRQARALILNSSKRVSVVTAVSPRAVVDLAY
VLFEVTRLVRAMAELYGGRPGTLGMLKLLRDVVAHLAVTGSIAVGDGLAQQVLGHGLASK
LSARLGEGVINGLMTARIGIAAMDLCRPLPFRAVKRPGIGDFMSDLTPDLSGGKNGEKA