Protein Info for Atu1348 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2115 transmembrane" amino acids 103 to 126 (24 residues), see Phobius details amino acids 137 to 162 (26 residues), see Phobius details PF01442: Apolipoprotein" amino acids 202 to 364 (163 residues), 14 bits, see alignment 3.3e-06 amino acids 373 to 481 (109 residues), 13.7 bits, see alignment 4.2e-06 amino acids 458 to 605 (148 residues), 24 bits, see alignment 2.9e-09 amino acids 500 to 656 (157 residues), 23.8 bits, see alignment 3.3e-09 amino acids 626 to 780 (155 residues), 26 bits, see alignment 7.2e-10 amino acids 775 to 872 (98 residues), 15.4 bits, see alignment 1.2e-06 amino acids 881 to 1010 (130 residues), 25.7 bits, see alignment 8.8e-10 amino acids 981 to 1118 (138 residues), 33 bits, see alignment 4.9e-12 amino acids 1149 to 1313 (165 residues), 29.6 bits, see alignment 5.6e-11 amino acids 1229 to 1387 (159 residues), 15.9 bits, see alignment 8.9e-07 amino acids 1341 to 1530 (190 residues), 19.2 bits, see alignment E=8.3e-08 amino acids 1586 to 1775 (190 residues), 17.6 bits, see alignment E=2.6e-07 amino acids 1764 to 1870 (107 residues), 15.3 bits, see alignment 1.4e-06

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1348)

Predicted SEED Role

"Kinesin-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJ72 at UniProt or InterPro

Protein Sequence (2115 amino acids)

>Atu1348 hypothetical protein (Agrobacterium fabrum C58)
MANNKISDSVDETAFQALEDALQLGAFEEKPETRKTAKPKQPEARVKEASRQTPAPEATR
APVEQTPRSPNLEAANDGSKRSPAMILKSLEGGSIGGALRNATIMSVIWALGGLGIAHLL
YGNALWSIGSLADLTAIPGLMAIVVGILVPVMLFFAFAIMMARARDLRNAARSMAEVALR
LAEPETVASDRIMSVGQAVRREVSAMNDGIERTIARATELETLVHSEVNALERSYADNEL
RVRSLVQELTAERDAIVNHAERIRSSIVGAQEQIKEELSIVGEELSMRIATTGEAFASMI
DTRSAALLEKSRASTEAMGSLIAAKTENLLQALNSSGSTISNEFDMRLHNLTSTLDERGE
VLLERFAIHASTLDSGVESLNSALEERTRQLNETLSARSLELNRNIERGQQVIGGSLDTV
LDKLSTTLEEKGLSFRQSLQSTADDAIMDLDLRSGLYEERMQATVGQVNSAFDEHVAQFA
SAFDQRAGSLDSKLMESLARINETVAGGSEALDTILTSGLERIGSTMTDQSLALATALGT
GQEMLENALESRTQAFSDAIGQRTAEITDAFTNSHAKIDTVLAERSNALFGALSASQDRF
DEALASRSLAITGSVSGTAEHLAAMLDERAAAINSVVADVERRLTETLETRAAAITGAVS
GIEDRISDTLESRTAALHDVVSGAESRIADTLDGRTAALSSAISGVEERIADTMDSRTLS
LDMTFANVEERLSETLDNRTSALTGIVASAEEKIAGALDSRTATFGDVVAGAETRIAETL
DGRTAALNAVVSGAEERIADALDSRTMALDMTFSGAEEKIAEALDTRTAALGELVASAET
RIAGALDSRTDSLKTVVSGAEERITDVLDSRTMALDMSFSGVEEKITDILDGRTAALKSA
VAGVEDRIAGALDSRTAALSGIVSGAEERIAEALDSRTLALDMTISGVEERIAEAMDARA
SSLSLAAAGVGQRLEATAFTLENALASGHERLETMLGSQAERIAGSLERNSGLIEQSVSG
AANRIENVVEDGSSRFAQTVEEGVSRLENNLSQSHEEIRTALDQRQADLAATLSSATTQM
GDMLSEQAMMIGTTVASSASMLELSLETQQDTLQKAIDGSAATLEARLRNSAGDIAVKIG
EAAREIGGATDALSTRIETSIGNVTTRLDETGARIETSLDALQTRVGGDLANVNNSIEDA
GRRFADALEDKTAVFARTSDEAAERITGILDEQTTRVADTFENRTSRLAETFDAGTARID
ERLGTMDRALTIGLENVNRTIEGKASDLAVSLRGAVVSATQNIGDEAARSSALLAKSGSE
FAEQVQAQNEAFTKAIEERSGEIVTRISDAQTRLSGQAAAVAQTFSEAGNIIVNKVAEAE
AVVRSQVGVISETLTSVESALDARGESIRSALDNRTRELNSMLASRSAELSRLIEEKAKP
VVEEYATIGREAAEKIVSAAQQSAELLSQSNSGMVGMVEQAISDYAAAGTDAASKLVAAT
RQSTDMLSETHTAMADAVEQGIDKYARSGSDAANKLVAATRQSTDMLSQTHNSMAEIVEQ
SATNFNAAVERAAQGFGAADEALNASATRFSESASQAADMVSSSSRLLEGKIDRLSNISG
QTLAQVAGIVGRFEEHSKVLSQASELLNAAQSSLVGTLEERQDALRSLSVGLVKRSEEIE
TAMRNVVGVVENTLNEAEERSQNVAGNLRDNLQASFSDIGRSLDETEQRARSAAQTMRGA
LLSAGQDASRSIESTLSDAQKYSDELVNRLRGGVESSLSEVDNLLGSASEKSNAAAANLK
ETLRQAVEEAVSRFAGATDEIRRSSHDIRRELDATRAELKRGAFDLPEEAKESAAAMRRA
VSEQIKALQDISQLVGRSTHQMEVSEPVARAIAATQPAAERRVEPRPQPAAAAPVQQRPA
QPQPAPALRGTLPLENRQVENRQAPAPAQPVATNPAGRREEGGGWISDLLRGASQETPAA
STPRASTEQQPTRAADTRNPRHMVESLNSLSVDIARAIDHDASVELWRRYQRGERDVFTR
RLYTLKGQTTFDEIKRKYEREAEFRTAVDRYITDFEKLLADVARTDRDRSVTQSYLTSDT
GKVYTMLAHAAGRFN