Protein Info for Atu1236 in Agrobacterium fabrum C58

Annotation: polysaccharide biosynthesis glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 63 to 81 (19 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 325 to 349 (25 residues), see Phobius details TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 65 to 517 (453 residues), 453.7 bits, see alignment E=8.9e-140 TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 71 to 517 (447 residues), 459 bits, see alignment E=2.4e-141 PF13727: CoA_binding_3" amino acids 108 to 287 (180 residues), 144.8 bits, see alignment E=2.9e-46 PF02397: Bac_transf" amino acids 323 to 511 (189 residues), 218.5 bits, see alignment E=5e-69

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1236)

Predicted SEED Role

"Probable glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZP5 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Atu1236 polysaccharide biosynthesis glycosyltransferase (Agrobacterium fabrum C58)
MTKTDKDRLQFDLASLRKKLSDYEAGGAAASETIVLNPLARQIANQLRAGNHSPNMVIGQ
LRLLEFTMLVIIAAVVNGIAADRGLETFLKVFSGGVLGAALCVFLLQAGDCYQLPTLRTP
LKMFARIQGAVCLSFVGIACFLLVFFPETLQSWQAFAIWYATGAIAIFAGRLILGFAIRH
WGRNGVMERRAVIVGGGDAARDLIRSLEQQSDNDIRICGIFDDRKSERSPEVVAGYPKLG
TFAELVEFARLTKLDMLIIALPLSAEARILQLLRKLWVLPVDIRIAAHANKLRFRPRAYS
HVGKVPMLDVFDKPIRDWDSVAKRLFDITFSLMGIALFWPVMLAAGIAVKATSKGPVLFK
QKRHGFNNETINVWKFRSMYTELSDPTAKKAVTKNDPRVTPVGRFLRKSSMDELPQLFNV
LYGDLSLVGPRPHAVHAQTGDLKYTEVVEHYFARHKVKPGVTGWAQINGWRGEIDHGDKI
KFRTEYDLYYIENWSLFLDLKILFLTPIRLLKSENAY