Protein Info for Atu1235 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 44 to 60 (17 residues), see Phobius details amino acids 66 to 84 (19 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 124 to 147 (24 residues), see Phobius details amino acids 168 to 185 (18 residues), see Phobius details amino acids 192 to 208 (17 residues), see Phobius details amino acids 214 to 231 (18 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 330 to 349 (20 residues), see Phobius details amino acids 361 to 378 (18 residues), see Phobius details amino acids 384 to 401 (18 residues), see Phobius details PF04932: Wzy_C" amino acids 198 to 338 (141 residues), 42.4 bits, see alignment E=3.1e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1235)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJC6 at UniProt or InterPro

Protein Sequence (413 amino acids)

>Atu1235 hypothetical protein (Agrobacterium fabrum C58)
MTHTGYQHTADFDAPLATMRLIGAFFIAFGVFLSGFVISEPAPYELMMVGQVALWFLLGL
RLSRTIVLLLCLLLAFNVGGYLSLTTMADLDEGPLYLAVSTFLALTSVFYAAIVEDKYQR
LLLIFRAWLTAALITALLGIIGYFHAIPGFEVFTLYDRAKGAFQDPNVFGPFLVTPSLYL
IYGLLTGKAMHAPWRILGLLILALGIFLSFSRAAWGLFLFATILLVFVMLLKERTAAFRL
KILVLFLVAAGLMVAAVIIALQFKQVADLFSSRASAVQSYDGGHLGRFARHYLGFLLAME
HPLGIGPMVFDDIFPAAEHNIWLKSLTTHGWFGFVIYLTLICWTIAAGFRHLLRPRPWQS
FLIISWVTFVGHVMIGAVIDTDHWRHFFLLLGILWGCMALEKRESLRRRPRAA