Protein Info for Atu1155 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 316 to 334 (19 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details amino acids 398 to 416 (19 residues), see Phobius details amino acids 422 to 440 (19 residues), see Phobius details PF06123: CreD" amino acids 14 to 447 (434 residues), 433.4 bits, see alignment E=4.8e-134

Best Hits

KEGG orthology group: K06143, inner membrane protein (inferred from 100% identity to atu:Atu1155)

Predicted SEED Role

"Inner membrane protein CreD-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZV1 at UniProt or InterPro

Protein Sequence (461 amino acids)

>Atu1155 hypothetical protein (Agrobacterium fabrum C58)
MPRGNFAASLRSPGAKFLMIGFISLVLLVPLLLVWGLTEERASRAREVSARIANGWGGDQ
VVNGPYLAVPFDVERRREVDGRTIVDRTTEWALVMPETLQVTADLKTEEKKLSIYSLPVY
NGALVLKGRFGQGVLQDLARFAGTPRLDNAILVLSIGDITGIRSSAGVRINGGAVLPFDP
GMRDMSVIASRALENNSIRSDAGVHRQIDRNLIESGFDFDIAFSLNGSGSFAVAPAGQTT
SFTAKADWPHPGFEGLFLPEVKTVTAADFNASWTIPYLARGIDRVVEGPRLPLSNSLMTI
NLVEPVKFYQVIARTLKYSIGFISLVFLAVFIVELKGGSVVHWIQYVLTGLALIVFYVLL
LALAEHTGFTVAYAAASFSTAALIAFYLGSATRSRRNGLALFSVLAVAYGVMYLVLNEDE
YALLAGAVISFIAIAATMFATRKVDWSGAGTAANSEFSSRT