Protein Info for Atu1142 in Agrobacterium fabrum C58

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 14 to 47 (34 residues), see Phobius details amino acids 63 to 90 (28 residues), see Phobius details amino acids 136 to 152 (17 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 219 to 245 (27 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 276 to 292 (17 residues), see Phobius details amino acids 312 to 343 (32 residues), see Phobius details PF01594: AI-2E_transport" amino acids 16 to 343 (328 residues), 239.6 bits, see alignment E=2.7e-75

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1142)

Predicted SEED Role

"Putative permease often clustered with de novo purine synthesis" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJG1 at UniProt or InterPro

Protein Sequence (385 amino acids)

>Atu1142 permease (Agrobacterium fabrum C58)
MQPHVSGTSLRRQVFFWIGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERRGL
SRLMATVVILVSFVLIFALSLIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPD
WVSGQINSVKENFSKLLTEGAGFIGTLLTQIWNSGKSLVDVLSLLVVTPVVAFYLLLDWD
RMIDKVDSWIPRDYVHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGL
LIGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPK
LVGKSVGLHPVWLMFALFAFGALFGFVGLLVAVPAAAAVGVLVRFALSRYLESDLYHGHA
ANLPWDANPALEEREASAGKIDSQS