Protein Info for Atu1114 in Agrobacterium fabrum C58

Annotation: GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 645 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 49 to 70 (22 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details PF00990: GGDEF" amino acids 221 to 376 (156 residues), 28.9 bits, see alignment E=9.2e-11 PF00563: EAL" amino acids 401 to 631 (231 residues), 173.9 bits, see alignment E=3.8e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1114)

Predicted SEED Role

"GGDEF domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZY6 at UniProt or InterPro

Protein Sequence (645 amino acids)

>Atu1114 GGDEF family protein (Agrobacterium fabrum C58)
MMELIVAQAAASAAELPFLLLQAAAVVGMVSMLMLLQRHIAFDDVRYKIYYGVVFGATGF
LLTLLVSEFIQLPSKPYIRSDLLFLAGVVGSWQGGLISLALISAGRFLFGGPALFGAAFL
DMSVISAFGIAIYGWMRRRRLTELGMREIAGVFAIRIFAALFAICLTYGLGMVGQDVFLS
NVGRRIVGATVGLPMIACLFLLLRSEARAREAVKKREVAARTDSLTGLPNRRALKDHIEM
TTRQAPAVPHALLLIEIVNIADVAAYQGDDWADLFWPKLAREICDGENGLLSKFNDPRSF
MFGDATLAVVIEGVSLEKSESAGLVLHLHEGLIAFFRSAEAGPVPHLKIGAANLEMVSHQ
NVASFLRHLSLALRRSENPVQIFPFSFAEKAARDEGVRQMLVRWIKNGKPPIFYQPKFEI
HNRRMIGAEALLRAIDTHGQALSPYYVLEIAERHRLLVEFEWSTIEAVVRDLAELPGLDP
DFHLAVNISASSFATACFADRVVALLQEMTVPAHRLSIEVTEMSRMPTTDSVQQNFDTLI
AAGVRLALDDFGTGYAALTLLARFPFEEVKIDQWMTSRLDQARFRDAVVLAFESAERYGA
KLVTEGIETEEQCRILMQMGIRFGQGYLYSPAVPLDRLLPRRAYA