Protein Info for Atu1106 in Agrobacterium fabrum C58

Annotation: organic solvent tolerance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF19838: LptD_2" amino acids 207 to 271 (65 residues), 28.4 bits, see alignment E=7e-11 PF04453: LptD" amino acids 306 to 707 (402 residues), 291.5 bits, see alignment E=1.2e-90

Best Hits

KEGG orthology group: K04744, LPS-assembly protein (inferred from 100% identity to atu:Atu1106)

Predicted SEED Role

"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJH2 at UniProt or InterPro

Protein Sequence (793 amino acids)

>Atu1106 organic solvent tolerance protein (Agrobacterium fabrum C58)
MAVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQDGLLASASQDDSKLLLTANELTYNR
DSQRVIAKGVVRMNYSGYRMVAQQVEYNQQTGRVIAHGNIELIEPGGNKIYADEMDVTDD
FGQGFVNALRVETTDNTRIAGESAERLNSDTMVLNNGVYTACLPCAERPEKAPLWQVKAE
RVIQDGKTHTVRLEKARLQLFGHSIAYIPFLTVPDNTVKRKSGFLFPQMSMTNKLGFGIG
VPYFQVLSDTSDLTVTPTYYTKQGLLLQAELRQRFETGMHTLTIAGISQQSSDTFISGTS
DALNDQRGMVATKGDFRINPRWAFGWDAMVQSDNNFSRTYSLKGYKNDVQTNQIYLTGTG
ERNSFDARGYYFNVQDTDNSELKERKQAIVHPVVDYRYFLPDPIYGGELSLTTNFTSISR
STQDSYAMGGFPRFNGLEGSYTRWTTEAEWKRTITMDSGLQITPILAARGDALWTDMTAA
SFTSGGTSYAYEGMINDDAALRGMVTGGLELRYPWLFTALNSNHVIEPIAQIFVRPNEQY
AGRFPNEDAQAFVFDATNLFERDKFSGFDRIEGGTRANIGFRYNGTFDNGYGIRAIAGQS
FHLAGENSFASYDLLNVGANSGLESDRSDYVAMAAFDAPIGLSLSSSLRLDKDNFEINRS
ETGISYSDRRINGKLSYTQVKAQPEYGYNENRDIIQASGSLRMDDNWSLFGSINYDLNGK
FAAERRIGIAYQDECTILTVSYSDEGNINSSRQAANDWSINARLAFRTLGDVSVGSANED
WNDMDIGWKPNNY