Protein Info for Atu1087 in Agrobacterium fabrum C58

Annotation: secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 signal peptide" amino acids 1 to 8 (8 residues), see Phobius details transmembrane" amino acids 9 to 28 (20 residues), see Phobius details PF00529: CusB_dom_1" amino acids 27 to 336 (310 residues), 26.8 bits, see alignment E=1e-09 PF13533: Biotin_lipoyl_2" amino acids 50 to 96 (47 residues), 44.8 bits, see alignment 2.1e-15 PF16576: HlyD_D23" amino acids 172 to 291 (120 residues), 53.8 bits, see alignment E=4.1e-18 PF13437: HlyD_3" amino acids 216 to 294 (79 residues), 53.1 bits, see alignment E=1.2e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1087)

Predicted SEED Role

"Membrane fusion component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D003 at UniProt or InterPro

Protein Sequence (355 amino acids)

>Atu1087 secretion protein (Agrobacterium fabrum C58)
MLKKFFTPVSILVLLGGIAGVALVLYAWRLPPFLSTVEMTDNAFVRGYVTTMSPQVSGYV
VNVPVKDYQEVKQGTLLAKIDDRIYHQKQAQAEATLDTHKAALDNSRQQENAANANIRSS
EAAVDSAEASLKQAQLASDRQDNLIKSGVGTSSLQEEAHAALEKARASLSQAKAALEVSR
QDLQTIIVNRSSLQAAVANAEAAVELARIDLANTEIRAPVDGRLGEVGVRTGQYVTAGTQ
LMAVVPHDVWVIANFKETQLAGMQVGQPVTISVDALHRRKLTGHVERFSPATGSEFAVIK
PDNATGNFVKIAQRLGVRIVIDADQPLAAELSPGMSVVVHLDKSKAPDGAETAAK