Protein Info for Atu1086 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 213 to 236 (24 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 344 to 361 (18 residues), see Phobius details amino acids 373 to 395 (23 residues), see Phobius details amino acids 405 to 430 (26 residues), see Phobius details amino acids 500 to 521 (22 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 392 (361 residues), 50.5 bits, see alignment E=7.8e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1086)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D004 at UniProt or InterPro

Protein Sequence (540 amino acids)

>Atu1086 MFS permease (Agrobacterium fabrum C58)
MVEAAIPAAPQPVERPLWLRLCFIFAGLSFFITQGLGMNLVMANIYQLQGEFSATVAEVA
WLSAAYMAPYATFSIALFKVRAQYGLRPFAELSIIAFVVASCLNLFVTDLHSAIVIRFVS
GMAAAPISSLGFLYILEAFPPARKFSLGFSIALTGTLLSAPLARIVSPSLLEIDGWNALY
SMEVGFALISLAVIYVLKVTPPPRAKVIERMDILSYVLFAGGLGCLAVMLTLGRFYWWFE
TWWLGALLATSIALLTLMAFIELPRKNPLLDLRWIFSKTNLHVMAVLLIYRAVSSEQSST
AVSFYQQLGLLNDQTTTLYALVLLATVLGGAACAWLMLSKYVDTAHVIALTLIAAGSFLD
SQSTNMTRPEQMYFSQMMIAFGAAMFLPPVMAKGFAAALGRGAPYLVNFIAIFLFTQITG
SMLMTGLLGSFVTLREKFHSNILVENILLTNPLVAQRVSQLSGAYSHVITDPALLKAEGL
TLLAQQVSREAYVLAYNDTFLLISVVSALALAVLLIHLVWMRVRPFLSREKTDTAPALQS