Protein Info for Atu1082 in Agrobacterium fabrum C58

Annotation: branched-chain amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 71 to 94 (24 residues), see Phobius details amino acids 129 to 157 (29 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details PF03591: AzlC" amino acids 19 to 158 (140 residues), 133.4 bits, see alignment E=4e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1082)

Predicted SEED Role

"FIG01076189: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJI2 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Atu1082 branched-chain amino acid permease (Agrobacterium fabrum C58)
MSTSEKRAELIAGLRSAAPLLVAMVPIGVVFGAVAIGKGLSPLEASLMSLLVFAGGSQFV
AMDLWTHPASWTALGFAALLVNLRHVLMSASIAGKLDDFKGWRKYAAMLVLTDESWALAE
FRVIAGRLTAAFFAGAALSIYLVWNLATLAGALLGAVVGDMSVIGLDFAFPAVFIVLLMG
FWKGRETGLVLLASASAACLTHALVPGAWYIAAGAMAGLAVAAFGRAEQVEQPA